.Bold { font-weight: bold; } .Title { font-weight: bold; font-size: 18px; color: #cc3300; } .Code { border: #8b4513 1px solid; padding-right: 5px; padding-left: 5px;color: #000066; font-family: 'Courier New' , Monospace;background-color: #ff9933; } The super-user of super-computer did not give me the writing permission for /usr/tmp,so I should modify the source script of FreeSurfer.How can I do it?Woo-Suk, TaeChuncheon, Korea--- Original Message ---From : "Pedro Paulo de Magalh?es Oliveira Junior"To : "Woo-Suk, Tae"Date : 2008/07/07 월요일 오전 9:28:29Subject : Re: [Freesurfer] path error on cluster super-computer I would try:
chmod -R 777 /usr/tmp 2008/7/6 Woo-Suk, Tae wstae@kangwon.ac.kr: Dear FreeSurfer experts!I had a error message when I ran a subjects on cluter super-computer.It seemed that the error was caused by permission on "/usr" directory.How can I correct this problem?Woo-Suk, TaeChuncheon, Korea-------------------------------------------------------------------------------------------Iteration 1 Mon Jul 7 08:51:03 KST 2008nu_correct -clobber ./tmp.mri_nu_correct.mni.25070/nu0.mnc ./tmp.mri_nu_correct.mni.25070/nu1.mnccouldn't create "/usr/tmp/nu_correct_25115/": Permission denied[a174tws@tachyond:/home01/a174tws/freesurfer/subjects/001/mri/] [2008-07-07 08:51:04] running: /home01/a174tws/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /usr/tmp/nu_correct_25115/ ./tmp.mri_nu_correct..mni.25070/nu0.mnc ./tmp.mri_nu_correct.mni.25070/nu1.imp nccreate: filename "/usr/tmp/nu_correct_25115/nu0.mnc": No such file or directorymicreate: MINC package entry pointnu_estimate_np_and_em: crashed while running mincresample (termination status=768)nu_correct: crashed while running nu_estimate_np_and_em (termination status=768)ERROR: nu_correctLinux tachyond 2.6.9-67.0.4.ELsmp #1 SMP Wed Mar 19 15:45:32 KST 2008 x86_64 x86_64 x86_64 GNU/Linux recon-all exited with ERRORS at Mon Jul 7 08:51:05 KST 2008-------------------------------------------------------------------------------------------
_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr..mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer