Dear Francesco, Can you please send us the command you ran, and the output you got? Kind regards, /Eugenio
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Juan Eugenio Iglesias
From: La Rosa, Francesco francesco.larosa@mssm.edu Date: Tuesday, November 18, 2025 at 10:47 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] HistoAtlasSegmentation NextBrain with FS 8.1
External Email - Use Caution Good morning,
I have been trying to run the HistoAtlasSegmentationhttps://secure-web.cisco.com/1ZIvtpmNUrrYqX7_h4BlvrEnYVZIRoEE4tdMenRNNTEsEzP_A0PANORagmkti3VwccvlRfazoeVYZM0qRNDGfIhC7-vazOwgjSr2kwwhM7GpoJy8hANG1nT4NDz95UZYUFmyMGHbfqFEqt51lW-tcG1Dc57b6ZE_a05qEkCEPCUB6bj040J6cBeHqjij5JAy4EQF1ssj3pyfbOW6AdSOKQ_NoEyHbdFabhNDslfxljiJ9nNXCOjCip18EWUSeQL9r35LM8JW2aHL-uJ5ebS5aTGhrXRBzvsgKmy_AdUakNciW1fBxWe_PnHPzYfv7qAu41qVho5ilQFOjIJB4VQfx3A/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FHistoAtlasSegmentation with either FS 8 or FS 8.1. The command fails with both versions as it seems that the FireANTs scripts (eg. segment_fireants.py') are not included in the released code. Could you help me with that?
Thanks, Francesco