Re: [Freesurfer] MRISalloc error during automatic reconstruction

Hi Julia

I think you only have about 1.5G free memory at the beinning of running recon-all, which is not enough for this subject. It looks like some other process is using another 2G, which might be enough if you can free it up. In general though you probably want a machine with more ram

cheers Bruce

On Wed, 13 Feb 2019, Julia Ströhlein wrote:

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Hi, of course.

Julia

-----Ursprüngliche Nachricht----- Von: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Im Auftrag von Bruce Fischl Gesendet: Dienstag, 12. Februar 2019 16:12 An: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] MRISalloc error during automatic reconstruction

Hi Julia

can you send us the recon-all.log file?

cheers Bruce On Tue, 12 Feb 2019, Julia Ströhlein wrote:

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Dear experts,

while running one of my subjects, I got this error:

MRISalloc(732595, 480): could not allocate vertices

Cannot allocate memory

Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10

20:41:14 UTC 2012 i686 i686 i386 GNU/Linux

recon-all -s P_04 exited with ERRORS at Mon Feb  4 16:40:03 EST 2019

Do you know what went wrong and how I can fix this?

Best regards,

Julia

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