Hi there
I ran Freesurfer 6.0 on a subject last night and it took about 12 hours (seemed to get to the very end) and then exited with errors. I can open my surfaces so I think it ended roughly with the atlas labelling. I attach the recon-all log file here.
best wishes
Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology