There are no details of the error message in the log.
Does your error look something like this? (0) INVALID_ARGUMENT: input must be 4-dimensional[1,72,72,72,24] [[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]] [[unet/unet_merge_4/concat/_64]] (1) INVALID_ARGUMENT: input must be 4-dimensional[1,72,72,72,24] [[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]]
If so, we fixed the error in the coming FS 8.0 release.
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Yanez-Ramos, Lupita Sent: Tuesday, February 11, 2025 1:23 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Recon-all error - release 8.0.0-beta
External Email - Use Caution From: Yanez-Ramos, Lupita <Yanez-Ramos.MariaGuadalupe@mayo.edumailto:Yanez-Ramos.MariaGuadalupe@mayo.edu> Date: Tuesday, February 11, 2025 at 11:53 To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Recon-all error - release 8.0.0-beta Hello FreeSurfer Developers,
I'm attempting to run recon-all and recon-all-clinical, but it is the first time that I used this since I changed my MacBook.
ERROR: Darwin R5523400.local 24.3.0 Darwin Kernel Version 24.3.0: Thu Jan 2 20:24:22 PST 2025; root:xnu-11215.81.4~3/RELEASE_ARM64_T6041 arm64 recon-all -s sub-01 exited with ERRORS at Tue Feb 11 10:33:15 CST 2025
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.
1) FreeSurfer version: FreeSurfer version 8.0.0-beta MacOS X darwin_arm64 (64b) PKG installer 2) Platform: macOs Sequoia 15.3. Chip Apple M4 Max 3) uname -a: Darwin r5523400.mayo.edu 24.3.0 Darwin Kernel Version 24.3.0: Thu Jan 2 20:24:22 PST 2025; root:xnu-11215.81.4~3/RELEASE_ARM64_T6041 arm64 4) recon-all.log: see attached
Thank you so much, I really need to use recon-all to complete my project.
Have a great day,
Lupita