This is a bug in make_average_subject. I have created patch which you can get from here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/
Follow the instructions in the README file for this bug. Please let me know if this works.
doug
On 11/21/2017 10:03 AM, Duran, Tugce wrote:
Dear FreeSurfer Experts,
I’m getting an error in make_average_subject and can’t find the reason.
Please see the following for the error log from recon-all.log:
*Loading aseg from /gpfs/projects/RadImagSci/CFN/test-SDA-import/VTRAK4/xserveraids/vtrak4/mci/IMAGENE/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_DEOBLIQUE_FREESURFER60_DEFAULT_KARST_10092017_RES/fsaverage_denoised-deoblique-default-nov-15-2017-ALL_DX_karstdesktop/mri/aseg.presurf.hypos.mgz*
*ASeg Vox2RAS: -----------*
*-1.00000 0.00000 0.00000 128.00000;*
*0.00000 0.00000 1.00000 -128.00000;*
*0.00000 -1.00000 0.00000 128.00000;*
*0.00000 0.00000 0.00000 1.00000;*
*mghRead(mri/norm.mgz, -1): could not open file*
*-------------------------*
**
*Labeling Slice*
*relabeling unlikely voxels in interior of white matter*
*mri/norm.mgz: could not load norm volume from (null)*
**
*Linux i1.karst.uits.iu.edu 2.6.32-696.13.2.el6.x86_64 #1 SMP Fri Sep 22 12:32:14 EDT 2017 x86_64 x86_64 x86_64 GNU/Linux*
**
*recon-all -s fsaverage_denoised-deoblique-default-nov-15-2017-ALL_DX_karstdesktop exited with ERRORS at Wed Nov 15 19:14:17 EST 2017*
**
**
It appears that during the process it doesn’t create the norm.mgz file to read or open it in the later processes (I think?). What can I do to fix this error?
Thanks,
Tugce**
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