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Hello FreeSurfer Developers,
I'm attempting to run freesurfer on a resampled T1w scan and it has come up with segmentation fault error at the stages of the atlas.
I was wondering if the resampled T1w scan has caused this error and this is the only difference between processing before. I am really stuck and its not a system compatability issue as I have been able to run all of my freesurfer output without error before so anything would be great.
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.
1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c 2) Platform: Performed on MobaXterm on windows computer using eddie super computer and Edinburgh university 3) uname -a: Linux node1c08.ecdf.ed.ac.uk 5.14.0-427.33.1.el9_4.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Aug 28 17:34:59 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux 4) recon-all.log: see attached
Not sure if the above is fully correct. Any help would be greatly appreciated!
Best wishes
Samantha Hendry The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. Is e buidheann carthannais a th' ann an Oilthigh Dh?n ?ideann, cl?raichte an Alba, ?ireamh cl?raidh SC005336.