23 Apr
2012
23 Apr
'12
9:24 a.m.
Hi Pawel
no, sorry, you need to segment everything to get hippocampal volumes. You can stop after autorecon2 and not run 3, which will save you a bit of time, but you are probably better off just running them all normally.
cheers Bruce
On Mon, 23 Apr 2012, Pawe? Dembi?ski wrote:
Hi, I'm currently doing a project for my neuroscience course. I've decided to compare automatic segmentation methods (comparing hippocampus volumes) (using Freesurfer and FIRST). My question is, whether there is a set of commands in Freesurfer which will enable me to segment only hippocampus. I'm only intrested in volumes, nothing else. I've noticed that recon-all takes a lot of time and been wandering if there is a faster way.
Pawel