External Email - Use Caution
Dear Sevan,
Which version of FreeSurfer are you running on which system (Mac, Linux?), and what is the exact command line and error message?
In case it is about nu_correct not being found: it should be in $FREESURFER_HOME/mni/bin/nu_correct, and if you get that error, most likely your environment variable $FREESURFER_HOME is not setup correctly for your shell.
Please also report the output of these 2 commands so we can know more:
1) echo $FREESURFER_HOME 2) ls -l $FREESURFER_HOME/mni/bin/nu_correct
Best,
Tim
On April 1, 2019 at 2:22 AM Sevan Harootonian skharootonian@ucdavis.edu wrote:
External Email - Use CautionHello Freesurfers,
I'm running recond-all and getting ERROR: nu_correct. I see a lot of people online have had this problem but I've failed to found a solution. Any suggestions?
I'm running freesurfer on a virtual machine and I've attached my recon-all.log
thanks, sev
--
Sevan Harootonian research specialist
Ekstrom's Lab University of Arizona Psychology Department _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany