Thanks so much for the improvement!
I ran the new mris_make_surfaces and the pial surfaces look much better in
FS 5.2!
Here is the comparison slice if you're interested.
https://yalesurvey.qualtrics.com/SE/?SID=SV_ddwW7I9yMQuCtPn
Best,
Daniel
--
Yung-Jui "Daniel" Yang, PhD
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
(203) 737-5454
>
>Date: Sat, 13 Apr 2013 22:36:32 -0400 (EDT)
>From: Bruce Fischl
fischl@nmr.mgh.harvard.edu
>Subject: [Freesurfer] 5.2 pial surfaces
>To: freesurfer@nmr.mgh.harvard.edu
>
>
>Hi All
>
>we've tracked down the problem with 5.2 pial surfaces that affects some
>types of acquisitions. We will be testing the fixed version this week and
>hope to release a corrected mris_make_surfaces in the near future. You
>should just be able to rerun autorecon2 I believe to update your surfaces
>and not the whole recon pipeline, but we'll make a more detailed
>announcement when we are ready with it. Anyone who has had problems with
>the 5.2 pial surfaces (or anyone else for that matter) is welcome to try
>it
>out. Just let us know your hardware/software environment and we'll send
>you
>a version.
>
>Sorry for the problems.
>
>cheers
>Bruce
>
>