Can you try resetting freeview’s preferences. You can do it in a terminal with the following command:
rm ~/Library/Preferences/edu.harvard.mgh.nmr.FreeView.plist
Wait for a few seconds and try starting freeview again.
Ruopeng
On Jul 21, 2021, at 1:49 PM, Sahil Bajaj <sahil.brain@gmail.commailto:sahil.brain@gmail.com> wrote:
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Hi,
I reinstalled FreeSurfer and now the latest version i.e., 7.2.0, but somehow I am still getting the same error message, please see below. I am still unsure how can I fix this issue?
Last login: Wed Jul 21 12:43:52 on ttys003 -------- freesurfer-darwin-macOS-7.2.0-20210713-aa8f76b -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer/7.2.0 FSFAST_HOME /Applications/freesurfer/7.2.0/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer/7.2.0/subjects MNI_DIR /Applications/freesurfer/7.2.0/mni FSL_DIR /usr/local/fsl
The default interactive shell is now zsh. To update your account to use zsh, please run `chsh -s /bin/zsh`. For more details, please visit MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://support.apple.com/kb/HT208050https://secure-web.cisco.com/1NayViq948wI2yc5kOEBSjlYK5Yuaj55DlGmUeAwVLjh0SOnYolzcsDDzFjElrcTSCPI-IaIAPpsbwB0s-bYXnq99HUpLfsLvOZE6U7BQs-Kh4MH81jn_4rG_u3nhhMS2CRiNDob1u5QrNOelD1g9JnANo-5sDH57hqOLAR2pWxqfUVVraFB9qJblNa8-8owff42fyWher7Cx8Q8B2GKv3yOqtM2RMI2MGOCzbzRhfrmiTSUBbTmYX4tx33ZuLbR-q1URO--snaUaYixEXh-1zQ/https%3A%2F%2Fsupport.apple.com%2Fkb%2FHT208050. BT136080:~ bajsah$ export FS_LICENSE=/Applications/freesurfer/7.2.0/license.txt BT136080:~ bajsah$ ls -l $FS_LICENSE -rw-r--r--@ 1 bajsah FFBHNTS\Domain Users 58 Jul 21 12:34 /Applications/freesurfer/7.2.0/license.txt BT136080:~ bajsah$ which freeview /Applications/freesurfer/7.2.0/bin/freeview BT136080:~ bajsah$ freeview /Applications/freesurfer/7.2.0/bin/freeview: line 2: 19977 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@" BT136080:~ bajsah$
On Tue, Jul 20, 2021 at 6:01 AM fsbuild <fsbuild@contbay.commailto:fsbuild@contbay.com> wrote: Your crash report listed an Intel Mac running BigSur 11.4. The screenshot below shows running the freesurfer 7.2.0 release installed on an Intel Mac running BigSur 11.4 (after installing the pkg file from MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.2.0/freesurfer-darw...https://secure-web.cisco.com/1uAAvCdKWzVjf3-skvFQVJnuofl7-ctvviv3iwprsfxL19YZU1CH-LLyuYt-xiKotqw9g5WovPaqeuijYbf46QJLJC0zP6RkHk0Ee06ddctL90CjCxv7ZhO48WfcSaQiFPbFZbG0_6aqUlE3qRwo8K55JIcUDnB4IP3q4suMmKXjdE-vHHxNl7c0Z5aVg4O0krQ2ZWp5RirTOEFV86EFHKXMhSxVfXK2pe2393vbg2NrSSO9jIOOUS0lTianON_UYQtogdCsHFuRQ7Rd_y4-fGg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.2.0%2Ffreesurfer-darwin-macOS-7.2.0.pkg).
In the terminal window you will see FS_LICENSE was manually set in the environment to point to the license.txt file. But the environment variable QT_MAC_WANTS_LAYER is not in the environment at all. After opening an empty freeview window, the volume /Applications/freesurfer/7.2.0/subjects/bert/mri/brain.mgz was loaded. Please give that a try on your machine.
- R.
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