Hello group,
I am running the multiple comparisons simulation after my mri_glmfit finished. I see that it went through all the iterations and then quit with the following error message it could not find the talairach.xfm file in my average brain. I did not use the fsaverage and instead created my own template based on average normal brains. I went back and checked my average subject folder and indeed, there is no talairach.xfm file in there. I also see that the 'tmp' directory in there has a lot of the intermediate files. I do not recollect seeing an error message when I created my average brain. So, was not sure what was going on. My 2 questions are:
1. How can I finish the rest of the make_average_subject processing to create my talairach.xfm file? Do I have to start from scratch or can I continue from where it left off?
2. The same question with the mri_glmfit-sim analysis also. Is there a way for me to continue from where it left off using the new talairach.xfm file or do I have to start from scratch and go through so many hours of simulation again?
Thanks a lot for all the help Koushik Govindarajan