Hi Freesurfer experts,
I have a volume label only which is only different from zero in the white matter-gray matter boundary. I am trying to convert this volume label to a surface label in order to visualize it in tksurfer. I am using mri_vol2surf:
mri_vol2surf --mov volume_label.nii --out volume_label2surf.mgh --out_type mgh --hemi lh --regheader H01 --surf white --ref volume_label.nii
However, when I load this surface as an overlay in tksurfer, to check the correctness, the original surface is not fully covered by the surface created by mri_vol2surf. Is there any way to make the surface fully cover the original surface so it doesn't look speckled?
After creating the surface I want to convert the surface to labels by mri_cor2label and finally to an annotation file by mris_label2annot.
Best, Karen