Re: [Freesurfer] mri_surf2vol questions

To get them both in one file, run mri_surf2vol to get the left hemisphere. When you run it a 2nd time for the right hemisphere add "--merge vol.lh.nii". I think FSL has software to swap dimensions doug

On 11/04/2013 09:53 AM, Govindarajan, Koushik Athreya wrote:

Hello Freesurfers,

       I am trying to use mri_surf2vol to convert my thickness 

files into analyze/nifty format to use with a custom code. Is there a way I can write all output files from mri_surf2vol in axial format? Also, is there a way in FreeSurfer to combine these thickness files from both hemispheres?

Thanks in advance

Koushik

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