29 Aug
2014
29 Aug
'14
11:23 a.m.
Hi Arsula
are you running this through recon-all or outside of it? The skull stripping works better after the intensity normalization that is part of recon-all
cheers Bruce
On Fri, 29 Aug 2014, Úrsula Pérez Ramírez wrote:
Hello,
I’m new with FreeSurfer and I’m getting a really bad skull stripping (almost nothing) with mri_watershed –atlas in images converted from DICOM to .mgz with mri_convert. I lowered the threshold but did not improved considerably. I have tried with a subject from the tutorial dataset and it’s OK. What can be the problem?
Thank you very much!
Úrsula