Hi Joshua
hmmm, label2vol takes our text label file format as input, not a .gii file. You probably need to ask the Wash U HCP folks how to do this conversion as I believe there should be a step before label2vol
cheers Bruce
On Thu, 9 Mar 2017, Burks, Joshua D (HSC) wrote:
Hello FreeSurfer Developers, I’m attempting to convert a dlabel file from the Human Connectome Project to a volumetric ROI that I can use for fiber tractography on other platforms. I followed the tutorial provided by HCP (hcp-users FAQ #9: How do I map data between FreeSurfer ... - HCP Wiki) for resampling HCP-derived data for use in FreeSurfer.
When I run the mri_label2vol command:
mri_label2vol: could not scan # of lines from label file ERROR reading /home/neuroresearch/workbench/test1.label.gii
Does anyone have thoughts on how to troubleshoot this? I have not seen any similar errors described in the list.
- FreeSurfer version: freesurfer-x86_64-apple-darwin16.4.0-dev-20170302
- Platform: MacOS 10.12.3