Hi,
I am trying to computer the LGI local gyrification index with freesurfer. I have Matlab on my machine. I got the following error:
< M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013a (8.1.0.604) 64-bit (maci64) February 15, 2013
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loading datas ...
FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.03 sec)
FREESURFER_READ_SURF [v 1.2 ] ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec)
preparing outer mesh structure ... face 5000 / 128476 face 10000 / 128476 face 15000 / 128476 face 20000 / 128476 face 25000 / 128476 face 30000 / 128476 face 35000 / 128476 face 40000 / 128476 face 45000 / 128476 face 50000 / 128476 face 55000 / 128476 face 60000 / 128476 face 65000 / 128476 face 70000 / 128476 face 75000 / 128476 face 80000 / 128476 face 85000 / 128476 face 90000 / 128476 face 95000 / 128476 face 100000 / 128476 face 105000 / 128476 face 110000 / 128476 face 115000 / 128476 face 120000 / 128476 face 125000 / 128476
mesh_outer =
vertices: [64240x3 double] faces: [128476x3 double] facesOfVertex: [64240x1 struct]
preparing pial mesh structure ... ...searching for mesh edges...done (250.55 sec). ... creating path file for vertex 1 / 64240 area file for outer ROIs saved at 1 Improper assignment with rectangular empty matrix.
Error in dsearchn (line 80) [d(i),t(i)] = min(sum((x-yi).^2,2));
Error in mesh_vertex_nearest (line 29) nearestIndex = dsearchn(vertices,points);
Error in reorganize_verticeslist (line 28) [nextindex,nextvalue]=mesh_vertex_nearest(mesh_total.vertices(remaininglist,:),mesh_total.vertices(verticeslist(start_vertex),:));
Error in make_roi_paths (line 93) reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, perim, verticeslist, step);
ERROR: make_roi_paths did not complete successfully! Darwin iui-MacBook-Pro.local 12.4.0 Darwin Kernel Version 12.4.0: Wed May 1 17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64 x86_64
recon-all -s 20130219-01 exited with ERRORS at Tue Jul 30 09:35:07 KST 2013
For more details, see the log file /Users/jeonghwan/Documents/freesurfer/ADHD-re/20130219-01/scripts/recon-all.log To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Any suggestions to correct my error?
Thanks, Jeonghwan