Hi Bruce and Karsten, the volume looks much better in nICE, that is why we thought it was odd. I have no idea why the log says 130 files found, there is clearly 128 files in that folder. I will process it further and see how it works out.
Thanks and have a nice day Inge
The log say's that it has found 130 dcm files, which is two files too much for a 128slice sequence, as nICE is saying. So, perhaps there is something in the folder, which should not be there, even though mri_convert also detectes that the sequence had originally 128 slices, but this might have produced this offset in the images.
How does the volume look likes, when you are looding it into nICE?
Best reagrds,
Karsten
is there an error? It looks like it converted fine. The signal intensities are essentially arbitrary until the intensity normalization. The volume looks okay (the lines in it are from reslicing it into standard RAS coordinates). Did you process it further?
cheers, Bruce