Hi Doug, hi List,
I ran into slight problems with unpacksdcmdir. I acquired some combined proton density and T2 volumes with one sequence (plus a bunch of additional slices from Inline/generic tab on out allegra menue), which resulted in mri_convert choling at the import of the second part of the series. In other words the proton density volume was imported fine, but the T2 and the MIP images did not make it into the target directory. Now I sit on a bunch of these things, where I am really interested in the T2s, but all freesurfer imports are the PDs (whichg are nice to have). So is this a known prblem with work arounds or is this a case of "don't do that then"? On a related note, I tried mri_convert to convert bfloat stacks into 3d analyze (from 1 stack per slice containing all time points, to one stack per timepoint containing all slices) while using --in_orientation (to correct for our inability to select the proper patient orientation); and lo, all that was converted was the first timepoint (I did not specify any specific frame, and was therefore expecting all time points to appear). Interestingly, doing the format conversion first and the "--in_orientation" thing later on the .img works like a charm, I am now puzzled whether this is the right behaviour. I am more than willing to test anything out or send test images if that helps...
Anyway, thanks for the nice tools and the great support
Ahoi Sebastian