no, sorry
On 5/24/2019 10:19 AM, Barletta, Valeria wrote:
That would be great. However, I am launching recon-all -all by entering the environment for freesurfer 6 in my terminal (we still have version 5_3 installed in our computers). So there is no way I can copy the files from the 2nd link in the folder $FREESURFER_HOME/bin (I have no access to that folder).
Is there another way to apply the command -conf2hires without having version 6 installed?
Thank you,
Vale
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edumailto:DGREVE@mgh.harvard.edu Sent: Thursday, May 23, 2019 3:46:30 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] XL defect in recon-all
You can look at this tutorial https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freev...
But if you are using high res, I would run high res stream I put together for the HCP: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/
On 5/23/19 2:59 PM, Barletta, Valeria wrote:
Dear Freesurfers,
I tried to launch "recon-all -all" for an high-resolution 7T 0.75 isotropic MEMPRAGE, but the process got stuck on a XL defect in rh, numbered 54, measuring over 20,000 voxels!!
How do I check, and eventually fix, this defect?
Thank you,
Vale
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