21 May
2013
21 May
'13
9:02 a.m.
Dear FreeSurfer experts,
I have used dt_recon for tensor fitting of my diffusion data. I used the following syntax:
dt_recon --i dwi.nii.gz --b data.bval data.bvec --s subject_ID --o /DTI --no-reg --no-tal
When I inspect the FA data, the tensor fitting itself looks good, but the data is not skull stripped:
FA map:
mask:
I was wondering if I did something wrong and how I should fix this.
Thanks for your help.
Best,
Vincent
