7 Aug
2017
7 Aug
'17
10:15 a.m.
Hi Sara sure, you can look up the thalamus labels in FreeSurferColorLUT.txt (10 and 49 for lh and rh), then use either mri_extract_labels or mri_binarize to pull our ROIs.
cheers Bruce On Mon, 7 Aug 2017, saraizad@alumni.ubc.ca wrote:
Hi Freesurfer team, Is it possible to extract Thalamus as an ROI from aseg.mgz to be used for tractography in FSL. If so, what command I have to use to extract it. Can I use the LUT table to extract thalamus?
Thanks, Sara