Hi Philip,
what version were you running? I think Martin Reuter fixed this bug.
cheers Bruce
On Mon, 26 Jul 2010, York, Philip wrote:
Dear Freesurfer experts,
one of my recent recon-all processes exited with errors as seen here
mri_ca_label GCA sequential renormalization: label 28 not consistently computed.
not using caudate to estimate GM means setting label Right_VentralDC based on Left_VentralDC = 1.15 x + 0 estimating mean gm scale to be 1.02 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 0.92 x + 0.0 Left_Pallidum too bright - rescaling by 0.984 (from 1.000) to 110.2 (was 112.0) Right_Pallidum too bright - rescaling by 0.993 (from 1.000) to 110.2 (was 111.0) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt Linux ucbirl-ubuntu 2.6.32-22-server #36-Ubuntu SMP Thu Jun 3 20:38:33 UTC 2010 x86_64 GNU/Linux
recon-all exited with ERRORS at Sat Jul 24 23:26:21 MDT 2010
I'm not sure if this is enough of the script to determine where the problem might be, but any advice on how to correct the error would be greatly appreciated.
Thank you,
Philip _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer