Hi, I've come across some problems when I run morph_subject. It seems to work fine until near the end. I've included the final bit of the log below. The problem seems to occur after it calls MNI programs. I've been having trouble using the MNI tools through freesurfer, so I created the talairach.xfm separately and placed it in the transforms directory. Is this problem due to the trouble with the MNI tools? What are the MNI tools used for in morph_subject, and are they necessary at this step? Thanks again for your help, Alex
registration took 1.70 hours writing registered surface to ../surf/lh.rh.sphere.reg... /data/flanders/work/alex/freesurfer/subjects/1000186_mni /data/flanders/work/alex/freesurfer/subjects/1000186_mni/scripts /data/flanders/work/alex/freesurfer/subjects/1000186_mni/scripts ------------------------------------- /data/flanders/work/alex/freesurfer/subjects/1000186_mni/scripts mris2rgb -o 1000186_mni.reg -both -c /data/flanders/work/alex/freesurfer/subjects/1000186_mni/surf/lh.sulc -canon /data/flanders/work/alex/freesurfer/subjects/1000186_mni/surf/lh.sphere.reg /data/flanders/work/alex/freesurfer/subjects/1000186_mni/surf/lh.sphere.reg /data/flanders/work/alex/freesurfer/subjects/1000186_mni/rgb ------------------------------------- using 1000186_mni.reg as output stem reading canonical coordinates from /data/flanders/work/alex/freesurfer/subjects/1000186_mni/surf/lh.sphere.reg. writing rgb file /data/flanders/work/alex/freesurfer/subjects/1000186_mni/rgb/lateral.lh.1000186_mni.reg.rgb writing rgb file /data/flanders/work/alex/freesurfer/subjects/1000186_mni/rgb/medial.lh.1000186_mni.reg.rgb morph_rgb-lh completed SUCCESSUFLLY ######################################## program versions used $Id: recon-all-nmr,v 1.37 2004/01/06 22:21:48 tosa Exp $ $Id: mri_motion_correct2,v 1.7 2004/01/16 20:25:10 tosa Exp $ mri_convert --version $ $Header: /software/source/minc/cvsroot/minc/progs/rawtominc/rawtominc.c,v 6.13 2004/02/02 18:24:58 bert Exp $ minctracc.c $Header: /software/source/registration/mni_autoreg/minctracc/Main/minctracc.c,v 96.3 2000/03/15 08:42:41 stever Exp $ $Header: /software/source/minc/cvsroot/minc/progs/mincresample/mincresample.c,v 6.12 2003/09/18 15:01:33 bert Exp $ $Header: /software/source/minc/cvsroot/minc/progs/mincaverage/mincaverage.c,v 6.4 2001/04/24 13:38:42 neelin Exp $ $Id: talairach2,v 1.5 2003/08/28 21:45:48 tosa Exp $ mri_convert --version $ # $Id: mritotal.in,v 1.10 2000/06/14 12:55:01 louis Exp $ # $Id: nu_estimate.in,v 1.15 1999/08/10 18:05:42 jgsled Exp $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ ####################################### INFO: SUBJECTS_DIR is /data/flanders/work/alex/freesurfer/subjects ERROR: cannot subject average7, needed to do average labels.