Re: [Freesurfer] Ex-Vivo Surface Misoriented in tkmedit, but not Freeview

Hi John

this is pretty puzzling. Is it causing any problems? tkmedit has been deprecated and it may just not be properly reading some header information or other. If nothing else is affected you can probably ignore it

cheers Bruce

On Mon, 29 Feb 2016, John Plass wrote:

Hi Bruce, Thanks for your help. In freeview, the surface outline overlays on the volume correctly, and both the volume and the surface are oriented correctly in terms of R-L, A-P, and S-I axes. In tkmedit, the volume is oriented correctly, but the surface appears to be oriented with some of the axes swapped. E.g., from the coronal view in tkmedit, I see a coronal slice of the volume, but the outline of an axial slice of the surface, with the anterior part pointing down.

John