Hi
I have a very minor question about the naming scheme for tracula output.
I have the folders anat and anatorig in the dlabel folder. Am I right that: anatorig is the T1 image in "freesurfer space" (256 x 256 x 256; LIA) anat is a rotated version of the T1 image in freesurfer space that lines up with the standard orientation used by FSL (256 x 256 x 256; LAS) So neither is actually in the same space as the *original* file that was passed to recon-all (176 x 240 x 256; LAS)? I ran mri_label2vol with dlabel/anat/anat_brain_mask.nii.gz as the --temp argument and the labels didn't line up nicely. They did line up with anatorig though. Is this what you'd expect?
Kx
-- Kirstie Whitaker, PhD Research Associate
Department of Psychiatry University of Cambridge
Mailing Address Brain Mapping Unit Department of Psychiatry Sir William Hardy Building Downing Street Cambridge CB2 3EB
Phone: +44 7583 535 307 Website: www.kirstiewhitaker.com