Re: [Freesurfer] Freesurfer with infarct patients

Hi Mariana

yes, control points would mess everything up. It looks like the rest of the surface was generated pretty accurately though - do you need to correct anything?

cheers Bruce

On Wed, 21 Jun 2017, Budge, Mariana wrote:

Hi Freesurfer experts,

I am running FS on a patient with a chronic right occipital lobe infarct as part of a larger study. The program does not recognize the area around the lesion as brain matter, and I am wondering how best to treat this situation. I am worried that adding Control Points will incorrectly label the region as white matter. I am attaching some pictures of slices where this is apparent. Thank you so much for your help!

Best,

Mariana