External Email - Use Caution
Hello Safi, I would make a directory named /usr/local/freesurfer/7.0.0-1 and put the freesurfer 7 release under that directory. Then set FREESURFER_HOME to one of /usr/local/freesurfer/6.0.0-1/usr/local/freesurfer/7.0.0-0.1b1/usr/local/freesurfer/7.0.0-1 If your $HOME/.bashrc file sets FREESURFER_HOME such that when you start a new terminal, you see the output from the SetUpFreeSurfer script listing a FREESURFER_HOME=/usr/local/freesurfer/<something> that is not what you want, then change how FREESURFER_HOME is set in that startup file.
- R.
On May 10, 2020, at 22:48, Safi Ullah . <safi.ullah@uog.edu.pk> wrote: External Email - Use Caution Dear List, I installed version 7 into a directory named 'freesurfer' where there are already Verion 6 and Version 7(beta) is installed. My OS is 'Ubuntu_FS_600_700b1_TutorialData'"/usr/local/freesurfer/6.0.0-1""/usr/local/freesurfer/7.0.0-0.1b1"So I installed Version 7 (stable) in the same directory "/usr/local/freesurfer/"but when I export my necessities$export FREESURFER_HOME=/usr/local/freesurfer$export SUBJECTS_DIR=/usr/local/freesurfer/subjects $source $FREESURFER_HOME/SetUpFreeSurfer.sh-------- freesurfer-linux-centos7_x86_64-7.0.0-20200429-3a03ebd --------Setting up environment for FreeSurfer/FS-FAST (and FSL)FREESURFER_HOME /usr/local/freesurferFSFAST_HOME /usr/local/freesurfer/6.0.0-1/fsfastFSF_OUTPUT_FORMAT nii.gzSUBJECTS_DIR /usr/local/freesurfer/subjectsTUTORIAL_DATA /home/developer/tutorial_dataMNI_DIR /usr/local/freesurfer/6.0.0-1/mniFSL_DIR /usr/local/freesurfer/6.0.0-1/fsl_507Although, I checked the creation dates of files from the mismatching directories in both versions, there is no update in the latest version, so it should not be a problem, however I wonder, why are some variables still pointing toward the old version? any solution,please? Regards, Safi_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer