[Freesurfer] problems about freesurfer7 with T2pial flag

Yijun Chen

22 Feb 2021 22 Feb '21

11:57 p.m.

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Hi freesurfer experts:

I encountered a problem about freesurfer 7 with the T2pial flag. when I use the freesurfer 6 — recon-all -all -i -s -T2 -T2pial, the resulting T2.mgz is skull-stripped. however, when I switch to the freesurfer 7, the resulting T2.mgz is with skull. Is there anything wrong?

Thanks,

Yijun.

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