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Dear Sir/Madam,
Hope this mail finds you well, considering the present pandemic scenario across globe.
I have installed FreeSurfer in my PC successfully and I have been following tutorials and freesurfer wiki to learn the basics of it. I have an image with .nii extension saved in usr/local/freesurfer/subjects directory in ubuntu. I wanted to use recon-all command for preprocessing the image.nii.
root@ubuntu:/usr/local/freesurfer/subjects# recon-all -s kctest01 -i (the input file.nii) the result shows, recon-all: command not found
It would be kind enough if you could please help me out. I am also sharing the screen shot of the terminal window I used for this programming, if it would e of any help.
Thank you, Best regards, Koustav