Hi Hari
if you include the -f flag to mri_cc it will include the fornix in the cc segmentation. We haven't tested it a ton so I'm not sure how well it will work on your data, but give it a try
cheers Bruce
On Thu, 7 Jul 2016, Hari Guragain wrote:
Dear Freesurfer Experts, I am interested to get the volume information of the structure "fornix" in the aseg.stats file. I would appreciate if there is any such argument that can be used along with the recon-all to get the volume information of the fornix like below. Till now, I have been using
· recon-all -autorecon-all -subjid your_subject_name
Any suggestions will be appreciated.
# ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 4 6489 6958.2 Left-Lateral-Ventricle 34.8514 11.5767 15.0000 82.0000 67.0000
Thank you,
Hari Guragain