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Dear Andrei, The script requires that you’ve run the main FreeSurfer longitudinal pipeline (see Longitudinal Processing in the wiki). Don’t worry about the files, they have different names and can coexist without issues 😉 Cheers, /E
-- Juan Eugenio Iglesias http://secure-web.cisco.com/10fTQ42u4_V7tprrGhZtquem9C8ol86QGWI0WSKTeJmrMNbb...
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Andrei Bieger andreibieger@gmail.com Date: Sunday, July 2, 2023 at 17:27 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Hippo subfields long
External Email - Use Caution Hello everyone,
Quick question. After running the longitudinal recon-all pipeline, is it required to run all subjects/tps through the segmentHA before running the segmentHA_long? If no, since I already ran the segment_HA in a few subjects, if I stop and start running the segmentHA_long, will I have any trouble in overlaying output files?
Thank you in advance! Andrei -- Andrei Bieger