You can load in the sig.mgh file instead of the ces.mgh file. Convert the sig to p with p = 10.^(-abs(sig)). It is fairly unusual to report the average p-value in an ROI, you might want to double check that this is really what you want to do.
doug
Agnieszka Burzynska wrote:
Dear all, I have a follow-up question to the previous discussion ("correction for behavioral varialbles in qdec" Tue, 04 Aug 2009.
Is there an option to extract the average p-value from a ROI? After a group analysis I specified ROIs at p < 0.001 and extracted the mean cortical thickness, the peak p-value, and mean ROI size. Now, I would like to report not the peak, but the average p-value of an ROI in the fsaverage space. Is there any flag to obtain this information? I did not use the mri_surfcluster command, but a matlab script to extract the information form the output of the mri_segstats command.
Thanks for help! Cheers, Aga
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