31 Mar
2025
31 Mar
'25
8:05 a.m.
External Email - Use Caution
Dear support I'm running samseg using Freesurfer 7.4.0. I'm using t1, t2 and flair as input. I'm not sure if it's necessary to specify --lesion-mask-pattern but if I try, I get an unrecognized flag error as it reads the second input to --lesion-mask-pattern as a new flag.
Log:
ERROR: Flag 1 unrecognized. --t1w [...]/001.mgz --flair [...]/oFL.mgz --t2w [...]/oT2.mgz --s [...]01 --recon --use-flair --refmode t1w --pallidum-separate --lesion --fill --threads 16 --lesion-mask-pattern 0 1 1
if I remove the "--lesion-mask-pattern 0 1 1" I don't get any error. Any suggestion? Thanks
Simone