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Hi Freesurfers,
I'm struggling to find out if the number of parcels during a process of transformations from annot -> nii.gz has changed.
I extended the parcels from 500.annot 2mm into the WM with mri_aparc2aseg \
--s s001 \ --annot 500.aparc \ --wmparc-dmax 2 \ --labelwm \ --hypo-as-wm \ --o mri/aparc.250+2mm.nii.gz
and coregistered the resulting file to the DWI image using bbregister and mri_vol2vol.
Using afni's probilistic tractography pipeline, I end up with more parcels than I thought I had.
Is there a way to check the number of parcels after extension into the WM (mri_aparc2aseg)?
I would be extremely grateful for some insight! Thanks, Stephanie
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