Dear Eugenio,
Thank you very much for the prompt reply, it seems like RAM was the key, it works now. Thank you once again.
Artyom
"Iglesias Gonzalez, Eugenio" e.iglesias@ucl.ac.uk 19.05.17 16.48
Uhr >>> Dear Artyom, You’re probably running out of RAM memory in those few cases. How much RAM do you have? Cheers, /Eugenio
Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
On 19 May 2017, at 15:31, Artyom Zinchenko Artyom.Zinchenko@psy.lmu.de wrote:
Dear experts, I am running running hippocampal subfield segmentation using the most recent version of the FSv6.0 on LinuxMint 17.3 Rosa.
For some (~ 25%, but not all) participants I did not get the subfields. I have later realized that although segmentation finished with out errors, I got the following message in the end:
Error using kvlGEMSMatlab std: :bad_alloc
Error in kvlRasterizeAtlasMesh (line 11)
Error in segmentSubjectT1_autoEstimateAlveusML (line 628).
I have read that I need to check whether the T1resampled.mgz actually exists in the temporary directory of the subject. I have checked and this file is indeed there: SBJ/tmp/hippoSF_T1_v10_right/T1resampled.mgz.
Please, let me know if this is a known problem and if there is anything I can do to correct it?
Thank you very much in advance,
Artyom
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