2 Feb
2017
2 Feb
'17
5:56 p.m.
Hi Joe
there are slight differences, and for sure we reserve the right to use the knowledge that it is a FLAIR scan in the algorithms, so you should probably rerun
cheers Bruce On Thu, 2 Feb 2017, Joe Necus (PGR) wrote:
Hello,
I am running recon-all on the latest version of freesurfer (Version 6) and would like to know whether there is any difference between using the -T2 -T2Pial and -Flair flags.
I am currently running recon-all with a T1 and FLAIR image, but have used the -T2 -T2pial flags and would like to know whether I need to go back and instead re-run with the -FLAIR flag instead.
Thanks a lot,
Joe