Hi ...
Thank you for the replies.
Now we already have an individual label of frontal, occipital, parietal and temporal lobes and their annot files (after converting using mris_label2annot). At this moment, we want to visualise these lobes as 3D image.
1. Can we do that using this annot files and how?
2. Is it possible to visualize the £D image using imageJ/mricron?
Your response is highly appreciated.
Thank you
Regards; Naza
-----Original Message----- From: Douglas N Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: 06 October 2010 18:14 To: Allison Stevens Cc: Mustafa, Nazahah; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Marking four majors lobes: frontal, parietal, temporal, occipital
You can break the aparc.annot into individual labels with mri_annotation2label, then merge the labels of each lobe into a single lobe label with mri_mergelabels, then combine the lobe labels into an annotation with mris_label2annot. The 3rd link below is probably the most useful one for this.
doug
Allison Stevens wrote:
Mustafa, There are a couple of relevant pages with information on this. These: http://surfer.nmr.mgh.harvard.edu/fswiki/PALS_B12
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg13908.html
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg04901.html Allison
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
The University of Aberdeen is a charity registered in Scotland, No SC013683.