John,
Have you tried the Centos6_x86_64 build of freesurfer on Fedora 19? The Centos4_x86_64 build is built against a rather old kernel, and likely to go away soon anyway.
Generally a debug build is not of much use for tkmedit seg-faults. If you still have trouble after trying the centos6 build, and the segfaults occur with mri_convert using data contained within freesurfer's sample subjects dir (freesurfer/subjects), then we can send a debug build of mri_convert.
Nick
On Sat, 2014-04-26 at 13:03 +0000, West, John D. wrote:
Hi Bruce.
Thanks so much for the offer of help. I would really appreciate it. If you can send me the files and then let me know what I need to capture I'll try it out.
Thanks. -John
Sent from my Windows Phone
From:Bruce Fischl Sent:4/25/2014 11:38 PM To:Freesurfer support list Subject:Re: [Freesurfer] Segmentatoin fault using Freesurfer Functions Fedora 19 - Freesurfer 5.1
Hi John
we could give you a version with debugging info and source and you could run it in gdb and find out where it is crashing. Or you could send us the core fie from a version with debugging on
cheers Bruce
On Fri, 25 Apr 2014, West, John D. wrote:
Hello.
We are trying to get Freesurfer 5.1 to work on Fedora 19. The
functions we have tried show the help
menu successfully when asked, but run into a Segmentation Fault when
trying to process anything. Both
tkmedit and mri_convert have shown this behavior. Segmentation
Faults are notoriously hard to track
down, but do you have any suggestions as to what may be causing
this? This version of freesurfer seems
to work fine on fedora 17 and older.
We are using the CentOS4 x86_64 version of Freesurfer 5.1.
Thanks.
-John West
Systems Administrator
IU Center for Neuroimaging
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