Hi,
trying to do my first steps with tracula I got stuck early in the preprocessing step. The DICOM import and preparation for FSL seem to work (mri_convert, mri_probedicom, flip4fsl, fslswapdim, fslorient). But then trac-preproc wants to move a file named dwi_orig_flip.mghdti.bvecs that does not exist. What did I wrong?
The command I used was
trac-all -prep -c dmrirc
The content of the configuration file "dmrirc" was the minimum as described in the tutorial:
setenv SUBJECTS_DIR /dat/Hirnreifung/Auswertung/freesurfer set dtroot = /dat/Hirnreifung/Auswertung/freesurfer set subjlist = (3001LT) set dcmroot = /dat/Hirnreifung/Daten/DICOM set dcmlist = (3001LT/d_Diff_ax_64dir_1av_b0_1000_3000/IM-0001-0001.dcm)
dcminfo.dat and trac-all.log are in the attachments.
Peter