External Email - Use Caution
Hello Megan, The errors you list below usually result from running a version of Freesurfer that does not match the operating system you are using, i.e., it looks like you are trying to run the version built for Ubuntu linux, 7.2.0 (freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b) … on a CentOS6 system, Description: CentOS release 6.7 (Final) If you have admin privileges on your system, then I would try installing the Freesurfer 7.2.0 CentOS6 rpm file on your CentOS6 system, which you can download from, https://secure-web.cisco.com/1_TrIriXqcfLg6YdYhz-fK97TtRKLaLawhDUmlefqUI_U6m... If you do not have admin privs to install the RPM, then you can download and expand the tar archive from,https://secure-web.cisco.com/1Fhw7EkvdlF04-nFWgMtF44HHWjdGMGEq_-VbJMp12jSu5l... The Freesurfer 7.2.0 distributions available for each operating system are currently listed on this page, https://secure-web.cisco.com/1Sbf8V045U7e_z5ui8AhyYxoVSIwU0U2mshLiNckTmoysYX...
- R. On Jul 1, 2022, at 13:32, Megan Schendel <mschendel@mrn.org> wrote: External Email - Use Caution Hi all,I had a working distribution on an old system a few weeks ago, but now I'm getting an error. Can anyone offer any troubleshooting ideas?I am working on a shared server with a freesurfer distribution that I own.Here is some system info:[mschendel@earth scripts]$ lsb_release -aLSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarchDistributor ID: CentOSDescription: CentOS release 6.7 (Final)Release: 6.7Codename: FinalOn the command line, the error looks like this:lta_convert: /lib64/libm.so.6: version `GLIBC_2.27' not found (required by lta_convert)lta_convert: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by lta_convert)lta_convert: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.19' not found (required by lta_convert)lta_convert: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by lta_convert)The recon-all.log file contains the following:Fri Jul 1 11:08:24 MDT 2022cd /export/research/analysis/unm_psych/dquinn/Navigate_20673/MEG_source_analysis/M87124539setenv SUBJECTS_DIR /export/research/analysis/unm_psych/dquinn/Navigate_20673/MEG_source_analysis/export/research/analysis/human/jstephen/shared/programs/freesurfer_7.2/freesurfer//bin/recon-all -all -i /export/research/archive/human/dicom/prisma/dquinn/navigate_20673//M87124539/Study20210623at161830/mprage_5e_32ch_RMS_0003/SerieMR-0003-0001-1.dcm -s /export/research/analysis/unm_psych/dquinn/Navigate_20673/MEG_source_analysis//M87124539 -openmp 8subjid M87124539setenv SUBJECTS_DIR /export/research/analysis/unm_psych/dquinn/Navigate_20673/MEG_source_analysisFREESURFER_HOME /export/research/analysis/human/jstephen/shared/programs/freesurfer_7.2/freesurfer/Actual FREESURFER_HOME /export/research/analysis/human/jstephen/shared/programs/freesurfer_7.2/freesurferbuild-stamp.txt: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76bLinux earth.mind.unm.edu 2.6.32-573.26.1.el6.x86_64 #1 SMP Wed May 4 00:57:44 UTC 2016 x86_64 x86_64 x86_64 GNU/Linuxcputime unlimitedfilesize unlimiteddatasize unlimitedstacksize 10240 kbytescoredumpsize 0 kbytesmemoryuse unlimitedvmemoryuse unlimiteddescriptors 1024memorylocked 64 kbytesmaxproc unlimited########################################program versions used7.2.0 (freesurfer-linux-ubuntu18_x86_64-7..2.0-20210721-aa8f76b)ERROR: Executable 'lta_convert -all-info failed! Is it missing from the distribution?'MEG TechnicianPronouns: she/herThe Mind Research Network1101 Yale Blvd. NEAlbuquerque, New Mexico 87106_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer