what do you mean isolate? what do you mean export? You can create a binary mask in nifti format with mri_binarize --i aseg.mgz --match 10 49 --o thalamus.mask.nii.gz
On 07/06/2016 04:46 PM, Dorsa Haji Ghaffari wrote:
Hi,
I was able to segment the MRI successfully, now I am trying to isolate the thalamus and export it out of FS as a volume. Is there a way to do that in FS?
Thank you
Dorsa
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer