No, you'll have to pick out each of the segmentation numbers and use mri_binarize with the --match option
On 5/31/18 3:27 PM, James Gullickson wrote:
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Sorry I wasn't clear. Yes, I would like to see it with all the non-STV removed, in order to see exactly what the supratentorial segmentation is including. So creating a mask would be ideal. Is there a match # for supratentorialvol and supratentorialvolnotvent to use in mri_binarize? I don't see one on this table https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROI/FreeSurfe...
On Wed, May 30, 2018 at 12:59 PM, Douglas N. Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> wrote:
I'm not sure what you mean. You can just use freeview to load the aseg. Or do you want all the non-STV removed? If that, you can create a mask of STV using mri_binarize and --match run on the aseg.mgz, then use mri_mask aseg.mgz stvmask.mgz aseg-stvonly.mgz On 05/30/2018 11:56 AM, James Gullickson wrote: > > > All, > > Is there any way to graphically visualize the segmentations for > SupraTentorialVol and SupraTentorialVolNotVent, for example in > freeview or tkmedit? Based on the descriptions I have read for the > supratentorial values, I want to use them for an analysis. However, I > would like to visualize them in my data set for QA purposes to ensure > they are capturing what I think they are capturing. > > Thanks, > > James > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline <http://www.partners.org/complianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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