Dear users,
Many of you have recently experienced problems with the hippocampal subfield and brainstem substructure segmentation modules. These modules have been broken in the dev version for a couple of weeks. All the problems have now been fixed internally. The updates will be incorporated to the dev version on the website as soon as possible. So, if your subfield module is not working, just wait for a few days (I would say late next week, to be on the safe side), and try downloading the dev version again.
On a happier note, we have added some new features to the modules: 1. They can now segment high resolution T1s that have been processed with recon-all -cm 2. There is now a longitudinal version of the hippocampal subfield segmentation module: https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalHippocampalSubfields based on our recent Neuroimage paper: “Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases”
Apologies to everyone for the inconvenience, and special thanks to our developer Zeke Kaufman for all the work.
Eugenio
Juan Eugenio Iglesias Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/