Hi all,
I used mris_preproc to generate a surface file from 4 feat directories, as described in the tutorial:
mris_preproc --out lh.cope1.nii.gz --target fsaverage --hemi lh \ --iv fbert1.feat/stats/cope1.nii.gz fbert1.feat/reg/freesurfer/anat2exf.register.dat --iv fbert2.feat/stats/cope1.nii.gz fbert2.feat/reg/freesurfer/anat2exf.register.dat --iv fbert3.feat/stats/cope1.nii.gz fbert3.feat/reg/freesurfer/anat2exf.register.dat --iv fbert4.feat/stats/cope1.nii.gz fbert4.feat/reg/freesurfer/anat2exf.register.dat
I would now like to feed the resulting lh.cope1.nii.gz into fixed-effects analysis with flame and tried the following:
flame -cope=lh.cope1.nii.gz -dm=design.mat -cs=design.grp -tc=design.con -fe
However, flame complains that not all compulsory arguments have been provided. I guess I need a varcope file and a mask file. How can I generate these, given that I am dealing with a surface format file?
Thanks very much in advance for your help.
Best regards,
Henry
________________________________
Henry Lütcke Biomedizinische NMR Forschungs GmbH am Max-Planck Institut für Biophysikalische Chemie
Am Fassberg 11 37077 Göttingen Germany
Phone: +49-(0)551-201 1735 Mobile: +49-(0)176-20808069
Mail: hluetck@gwdg.de