Hi Cathy, try removing "--parc --aparc" or changing it to "--parc aparc". Let me know if that works. doug
On 01/18/2013 09:26 AM, Catherine Bois wrote:
Hi, I am trying to extract stats files from my subjects using this command
aparcstats2table --hemi lh --subjects EHRS_* --skip --meas thickness --parc --aparc --tablefile lh.thick.table
however I keep getting this error message
Parsing the .stats files Skipping /sdata/images/projects/EHRS/2/Freesurfer_EHRS/READYFORANALYSIS/EHRS_0970_3/stats/lh.--aparc.stats Building the table.. Traceback (most recent call last): File "/usr/local2/freesurfer/bin/aparcstats2table", line 338, in ? rows, columns, table = sanitize_table(options, pretable) File "/usr/local2/freesurfer/bin/aparcstats2table", line 253, in sanitize_table _spec, _parc_measure_map = dt[0] IndexError: list index out of range [cbois@poplar ~]$
I have previously used this command on version 5, I now have version 5.1, have the commands possibly changed?
Thanks,
Cathy