Hello,
I am trying to transfer Yeo2011 parcellations to a subject’s surface after I fixed an issue with the wm surface and reran recon. The recon had no errors and the surface is fixed. However, when I tried to run mri_surf2surf I got “MRISreadAnnotationIntoArray: vertex index out of range” and the output is clearly wrong (see attached), despite it working before the recon edits. Any help would be much appreciated!
This is the re-run of recon on the edited subject: recon-all -autorecon2-wm -subjid 200614
This is the mri_surf2surf on the edited subject: mri_surf2surf --srcsubject fsaverage --trgsubject 200614 --hemi lh --sval-annot fsaverage/label/lh.Yeo2011_7Networks_N1000.annot --tval 200614/label/lh.Yeo2011_7Networks_N1000.annot
This is the output: sysname Linux hostname c0012 machine x86_64 user snolin srcsubject = fsaverage srcval = (null) srctype = trgsubject = 200614 trgval = 200614/label/lh.Yeo2011_7Networks_N1000.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/project/vislab/raw/HCP_900sub/subjects_reconall/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /data/project/vislab/raw/HCP_900sub/subjects_reconall/fsaverage/surf/lh.orig reading colortable from annotation file... colortable with 8 entries read (originally MyColorLUT) Reading target surface reg /data/project/vislab/raw/HCP_900sub/subjects_reconall/200614/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (136080)
Surf2Surf: Dividing by number of hits (136080) INFO: nSrcLost = 54959 nTrg121 = 136080, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 87475, nSrcLost = 54959, nSrcMulti = 76367, MnSrcMultiHits = 0.636466 Saving target data Converting to target annot Saving to target annot 200614/label/lh.Yeo2011_7Networks_N1000.annot
mri_surf2surf --srcsubject fsaverage --trgsubject 200614 --hemi rh --sval-annot fsaverage/label/rh.Yeo2011_7Networks_N1000.annot --tval 200614/label/rh.Yeo2011_7Networks_N1000.annot
sysname Linux hostname c0012 machine x86_64 user snolin srcsubject = fsaverage srcval = (null) srctype = trgsubject = 200614 trgval = 200614/label/rh.Yeo2011_7Networks_N1000.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/project/vislab/raw/HCP_900sub/subjects_reconall/fsaverage/surf/rh.sphere.reg Loading source data Reading surface file /data/project/vislab/raw/HCP_900sub/subjects_reconall/fsaverage/surf/rh.orig reading colortable from annotation file... colortable with 8 entries read (originally MyColorLUT) Reading target surface reg /data/project/vislab/raw/HCP_900sub/subjects_reconall/200614/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (137933)
Surf2Surf: Dividing by number of hits (137933) INFO: nSrcLost = 54189 nTrg121 = 137933, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 87617, nSrcLost = 54189, nSrcMulti = 76225, MnSrcMultiHits = 0.660098 Saving target data Converting to target annot Saving to target annot 200614/label/rh.Yeo2011_7Networks_N1000.annot
subject = 200614 annotation = 200614/label/rh.Yeo2011_7Networks_N1000.annot hemi = rh outdir = 200614/label/Yeolabels surface = white
Reading surface /data/project/vislab/raw/HCP_900sub/subjects_reconall/200614/surf/rh.white Loading annotations from 200614/label/rh.Yeo2011_7Networks_N1000.annot MRISreadAnnotationIntoArray: vertex index out of range: 137425 i=00010101, in_array_size=137425 annot file: 200614/label/rh.Yeo2011_7Networks_N1000.annot MRISreadAnnotationIntoArray: vertex index out of range: 137426 i=00010101, in_array_size=137425 annot file: 200614/label/rh.Yeo2011_7Networks_N1000.annot MRISreadAnnotationIntoArray: vertex index out of range: 137427 i=00010101, in_array_size=137425 annot file: 200614/label/rh.Yeo2011_7Networks_N1000.annot
