I edited the white matter, and then ran recon-all command. The image I included shows that the white matter changes, but the contour lines have not changed. Subsequently, how do I change the contour lines to reflect the changes I made to the white matter. Additionally, is changing the control points the way to change grey matter?
Thanks,
Gaurang
On 5/17/16, 5:44 PM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Gaurang
what volume are you editing? You should be editing the wm.mgz.
cheers Bruce
On Tue, 17 May 2016, Limachia, Gaurang (NIH/NINDS) [F] wrote:
This is how the white matter changes look like after making corrections and running recon all.
From: "Limachia , Gaurang (NIH/NINDS) [F]" gaurang.limachia@nih.gov Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Tuesday, May 17, 2016 at 4:49 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Freesurfer
I made the necessary changes to the white matter, and when I ran recon all the changes with the voxels showed up, but there was no change to the contour lines. In order to change the gray matter volume, I can¹t find the changes I already made on the white matter (the picture with green control points). If I am able to see the changes I made to the white matter, I can utilize the control points to modify the segmentation. Also will this impact the gray matter volume as well as per your previous response to my question.
Thanks,
Gaurang