Hello Burce,
Thank you for the reply, I see well I would want to use the surfaces then. Would you recommend something like running recon-all and using -nosphere?
-Taha
On Sat, Apr 30, 2016 at 1:14 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Taha
you can, but it won't be as accurate since the surfaces give better estimates of cortex and such (and we use them to automatically correct the aseg). You can run the individual steps through the end of mri_ca_label if you want to stop there
cheers Bruce
On Fri, 29 Apr 2016, Taha Abdullah wrote:
Hello All,
I am running an analysis strictly on subcortical volumes, and to save time and disk space I wanted to avoid if possible construction of surfaces and seems that it is necessary? I first ran recon-all -autorecon1, second I ran recon-all -subcortseg and the final error was regarding no such file or dir, specifically the /surf/lh.white.
Is there a better way to run this type of analysis to save disk space and time? Possibly using -autorecon2'; would love any input. Thank you in advance!
-- Taha Abdullah Department of Physiology Northwestern University Masters of Science Physiology and Biophysics, Georgetown University 2015
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