Hi dear all I attach a new picture to illustrate this problem. I erased some voxels in wm.mgz and rerun. The lh.orig(blue line) looks well, but lh.white(yellow line) don’t along the white surface in some area. Could anyone give me some advice? Thanks very much.
Best wishes Cong Chen
Date: Sun, 4 Sep 2016 15:15:42 +0800 From: Cong 3110103623@zju.edu.cn Subject: [Freesurfer] White matter surface don't change after editing
Dear freesurfer team? I have some MRI images from a GE scanner, it seems that images? quality is poor because grey matter is bright in so much area and these grey matter is included in wm.mgz. So I deleted wrong voxels in wm.mgz by freeview and rerun through command ? recon-all -autorecon2-wm -autorecon3 -subjid subjname?. But ?h.white (yellow line) don?t change after rerunning as you can see in the attached picture. Is this problem caused by deleting too many voxels and how to fix it? Thanks very much.
Regards Cong Chen
